Slides and videos from the Summer school 2025
We are currently developing a Massive Open Online Course (MOOC) to accompany the text, providing a rich, interactive learning experience. Stay tuned for updates as we continue expanding our open educational resources.
Lecture slides and videos
- The economy of the cell (Meike Wortel) Slides | Video
- An inventory of cell components (Diana Széliová / Pranas Grigaitis) Slides | Video
- Cell metabolism (Pranas Grigaitis / Steffen Waldherr) Slides | Video
- Optimization of metabolic fluxes (Felipe Scott Contador / Steffen Waldherr) Slides | Video
- The enzyme cost of metabolic fluxes (Elad Noor) Slides | Video
- Optimization of metabolic states (Meike Wortel) Slides | Video
- Principles of cell growth (Hollie Hindley) Slides | Video
- Growth balance analysis (Hugo Dourado) Slides | Video
- Modeling of microbial communities (Jürgen Zanghellini, Stefan Müller, and Michael Predl) Slides | Video
- Optimal cell behavior in time (Hidde de Jong) Slides | Video
- Diversity of metabolic flux distributions (Roberto Mulet) Slides | Video
- Economy of organ form and function (Frédérique Noël) Slides | Video
More information
- Summer school - Practical announcements (Diana Széliová) Slides
- Economy of the cell - Community activities (Wolfram Liebermeister) Slides
Computer exercises
Computer exercises (Jupyter notebooks for "Practical work") can be found in this git repository.
- Introduction to Python & Jupyter (1) (Elad Noor / Michela Pauletti)
- Flux Balance Analysis (2) (Felipe Scott Contador)
- Elementary Flux Modes (3) (Diana Széliová)
- Optimal enzyme profiles (4) (Elad Noor)
- Optimal metabolic states (5) (Meike Wortel)
- Self-replicating cells (6) (Hollie Hindley)
- Flux variability and entropy (7) (Marcelo Rivas-Astroza)
- Dynamic Flux Balance Analysis (8) (Steffen Waldherr)
Night Science
We hosted a Night Science session, a course on the creative scientific process, developed by Itai Yanai and Martin Lercher.
- Website: night-science.org
- Editorials: www.biomedcentral.com/collections/night-science
- Podcast: nightscience.buzzsprout.com (with links to spotify etc.)